Features / Specs

Current feature list:

  • Dockerized single-user servers with JupyterLab interface
  • Persistent storage available
  • Public and Shared folders for sharing work
  • Python 3.7 and R 3.6 Kernels
  • Various exporting options (eg. HTML, PDF
  • Interactive slides / presentation mode

Environment

Base

  • JupyterLab 2.1.0
  • Python 3.7 kernel
  • Biopython 1.76
  • R 3.6.3 Kernel
  • Bioconductor package manager

Python packages

  • pandas 0.25.1
  • numpy 1.17.2
  • matplotlib 3.1.1
  • scipy 1.3.1
  • scikit-image 0.15.0
  • scikit-learn 0.21.3
  • statsmodels 0.10.1
  • bokeh 2.0.0

Extras

  • RISE 5.6.1 –> for making interactive presentations
  • pandoc 2.9.2-1 for exporting notebooks in various formats (eg. PDF)
  • EMBL-Tools