Current feature list:
- Dockerized single-user servers with JupyterLab interface
- Persistent storage available
- Public and Shared folders for sharing work
- Python 3.7 and R 3.6 Kernels
- Various exporting options (eg. HTML, PDF
- Interactive slides / presentation mode
Environment
Base
- JupyterLab 2.1.0
- Python 3.7 kernel
- Biopython 1.76
- R 3.6.3 Kernel
- Bioconductor package manager
Python packages
- pandas 0.25.1
- numpy 1.17.2
- matplotlib 3.1.1
- scipy 1.3.1
- scikit-image 0.15.0
- scikit-learn 0.21.3
- statsmodels 0.10.1
- bokeh 2.0.0
Extras
- RISE 5.6.1 –> for making interactive presentations
- pandoc 2.9.2-1 for exporting notebooks in various formats (eg. PDF)
- EMBL-Tools